Index

_

__init__() (Arduino method), [1], [2], [3] (BaslerCamera method), [1], [2], [3] (GPIOTrigger method), [1], [2], [3] (JulaboChiller method), [1], [2], [3] (Oscilloscope method), [1], [2] (Seq method), [1], [2] (TCS method), [1], [2], [3] (TCSInterface method), [1], [2]

A

add_data() (Oscilloscope method), [1], [2] Arduino (class in poulet_py) (class in poulet_py.hardware) (class in poulet_py.hardware.stimulator) (class in poulet_py.hardware.stimulator.arduino)

AUTOMATIC_CALIBRATION (TCSCommand attribute), [1], [2], [3] ax (Oscilloscope attribute), [1], [2]

B

baseline (TCSStimulus attribute), [1], [2], [3], [4], [5], [6], [7] BASELINE_TEMPERATURE (TCSCommand attribute), [1], [2], [3] BaseTrigger (class in poulet_py) (class in poulet_py.hardware) (class in poulet_py.hardware.triggers) (class in poulet_py.hardware.triggers.base) BaslerCamera (class in poulet_py) (class in poulet_py.hardware) (class in poulet_py.hardware.camera) (class in poulet_py.hardware.camera.basler) bAspectRatioX (uvc_format_desc attribute) bAspectRatioY (uvc_format_desc attribute) bBitsPerPixel (uvc_format_desc attribute) bCopyProtect (uvc_format_desc attribute) bDefaultFrameIndex (uvc_format_desc attribute) bDescriptorSubtype (uvc_format_desc attribute) (uvc_frame_desc attribute)

bFormatIndex (uvc_format_desc attribute) (uvc_stream_ctrl attribute) bFrameIndex (uvc_frame_desc attribute) (uvc_stream_ctrl attribute) bFrameIntervalType (uvc_frame_desc attribute) bInterfaceNumber (uvc_stream_ctrl attribute) bMaxVersion (uvc_stream_ctrl attribute) bmCapabilities (uvc_frame_desc attribute) bmFramingInfo (uvc_stream_ctrl attribute) bmHint (uvc_stream_ctrl attribute) bmInterlaceFlags (uvc_format_desc attribute) bMinVersion (uvc_stream_ctrl attribute) bNumFrameDescriptors (uvc_format_desc attribute) bPreferredVersion (uvc_stream_ctrl attribute) button_cb (uvc_device_handle attribute) button_user_ptr (uvc_device_handle attribute) BUZZER (TCSCommand attribute), [1], [2], [3] bVariableSize (uvc_format_desc attribute)

C

call_extension_unit() (in module poulet_py.hardware.camera.uvctypes) capture_frame() (BaslerCamera method), [1], [2], [3] capture_time (uvc_frame attribute) check_or_create() (in module poulet_py) (in module poulet_py.tools) (in module poulet_py.tools.organizational) check_started() (JulaboChiller method), [1], [2], [3] check_status() (JulaboChiller method), [1], [2], [3]

check_version() (JulaboChiller method), [1], [2], [3] cleanup() (BaseTrigger method), [1], [2], [3] (GPIOTrigger method), [1], [2], [3] (KeyboardTrigger method), [1], [2], [3] close() (TCS method), [1], [2], [3], [4], [5], [6], [7] close_port() (Arduino method), [1], [2], [3] (JulaboChiller method), [1], [2], [3] commands() (TCSStimulus method), [1], [2], [3], [4], [5], [6], [7] ctx (uvc_device attribute)

D

data (uvc_frame attribute) data_bytes (uvc_frame attribute) DEACTIVATE_DISPLAY (TCSCommand attribute), [1], [2], [3] define_folder_name() (in module poulet_py) (in module poulet_py.tools) (in module poulet_py.tools.organizational) desiredFfcPeriod (lep_sys_shutter_mode attribute) desiredFfcTempDelta (lep_sys_shutter_mode attribute) dev (uvc_device_handle attribute) DISPLAY_TEMPERATURES_BETWEEN_STIMULATION (TCSCommand attribute), [1], [2], [3] DISPLAY_TEMPERATURES_DURING_STIMULATION (TCSCommand attribute), [1], [2], [3] dsp_build (lep_oem_sw_version attribute) dsp_major (lep_oem_sw_version attribute)

dsp_minor (lep_oem_sw_version attribute) duration (TCSStimulus attribute), [1], [2], [3], [4], [5], [6], [7] dwBytesPerLine (uvc_frame_desc attribute) dwClockFrequency (uvc_stream_ctrl attribute) dwDefaultFrameInterval (uvc_frame_desc attribute) dwFrameInterval (uvc_stream_ctrl attribute) dwFrameIntervalStep (uvc_frame_desc attribute) dwMaxBitRate (uvc_frame_desc attribute) dwMaxFrameInterval (uvc_frame_desc attribute) dwMaxPayloadTransferSize (uvc_stream_ctrl attribute) dwMaxVideoFrameBufferSize (uvc_frame_desc attribute) dwMaxVideoFrameSize (uvc_stream_ctrl attribute) dwMinBitRate (uvc_frame_desc attribute) dwMinFrameInterval (uvc_frame_desc attribute)

E

edge (GPIOTrigger attribute), [1], [2], [3] elapsedTimeSinceLastFfc (lep_sys_shutter_mode attribute)

execute_command() (TCS method), [1], [2], [3] explicitCmdToOpen (lep_sys_shutter_mode attribute)

F

ffcDesired (lep_sys_shutter_mode attribute) fig (Oscilloscope attribute), [1], [2] file (Log attribute)

force_redraw() (Oscilloscope method), [1], [2] format() (TCSCommand method), [1], [2], [3] frame_descs (uvc_format_desc attribute) frame_format (uvc_frame attribute)

G

generate_stimulus_sequence() (in module poulet_py) (in module poulet_py.tools) (in module poulet_py.tools.generators) get_readings() (TCS method), [1], [2], [3], [4], [5], [6], [7] get_target_temperature() (JulaboChiller method), [1], [2], [3] get_temperature() (JulaboChiller method), [1], [2], [3] go_to() (in module poulet_py) (in module poulet_py.tools) (in module poulet_py.tools.organizational)

GPIOTrigger (class in poulet_py) (class in poulet_py.hardware) (class in poulet_py.hardware.triggers) (class in poulet_py.hardware.triggers.gpio) gpp_build (lep_oem_sw_version attribute) gpp_major (lep_oem_sw_version attribute) gpp_minor (lep_oem_sw_version attribute) guidFormat (uvc_format_desc attribute)

H

HALT_STIMULATION (TCSCommand attribute), [1], [2], [3]

handler_thread (uvc_context attribute) height (uvc_frame attribute)

I

imminentDelay (lep_sys_shutter_mode attribute) info (uvc_device_handle attribute) info() (TCS method), [1], [2], [3], [4], [5], [6], [7]

init() (TCS method), [1], [2], [3], [4], [5], [6], [7] interstimulus_period (TCSInterface attribute), [1], [2] intervals (uvc_frame_desc attribute) is_isight (uvc_device_handle attribute)

J

json_serializer() (in module poulet_py) (in module poulet_py.tools) (in module poulet_py.tools.serializers)

JulaboChiller (class in poulet_py) (class in poulet_py.hardware) (class in poulet_py.hardware.stimulator) (class in poulet_py.hardware.stimulator.julabo)

K

key (KeyboardTrigger attribute), [1], [2], [3] KeyboardTrigger (class in poulet_py) (class in poulet_py.hardware) (class in poulet_py.hardware.triggers) (class in poulet_py.hardware.triggers.keyboard)

kill_handler_thread (uvc_context attribute)

L

lep_oem_sw_version (class in poulet_py.hardware.camera.uvctypes) lep_sys_shutter_mode (class in poulet_py.hardware.camera.uvctypes) level (Log attribute) library_owns_data (uvc_frame attribute)

Log (class in poulet_py.config.settings) log (Settings attribute), [1], [2] log_error() (Arduino method), [1], [2], [3] (BaslerCamera method), [1], [2], [3]

M

mode (TCSInterface attribute), [1], [2] model_config (BaseTrigger attribute), [1], [2], [3] (GPIOTrigger attribute), [1], [2], [3] (KeyboardTrigger attribute), [1], [2], [3] (Log attribute) (Settings attribute), [1], [2] (TCSStimulus attribute), [1], [2], [3] model_post_init() (GPIOTrigger method), [1], [2], [3] module poulet_py poulet_py.config poulet_py.config.logging poulet_py.config.settings poulet_py.converters poulet_py.converters.seq poulet_py.hardware poulet_py.hardware.camera poulet_py.hardware.camera.basler poulet_py.hardware.camera.uvctypes poulet_py.hardware.stimulator poulet_py.hardware.stimulator.arduino poulet_py.hardware.stimulator.julabo poulet_py.hardware.stimulator.qst poulet_py.hardware.triggers poulet_py.hardware.triggers.base poulet_py.hardware.triggers.gpio poulet_py.hardware.triggers.keyboard poulet_py.tools poulet_py.tools.generators poulet_py.tools.organizational poulet_py.tools.serializers poulet_py.utils poulet_py.utils.oscilloscope poulet_py.utils.qst

N

n_trials (TCSInterface attribute), [1], [2] name (BaseTrigger attribute), [1], [2], [3] (GPIOTrigger attribute), [1], [2] (KeyboardTrigger attribute), [1], [2]

next (uvc_device_handle attribute) (uvc_format_desc attribute) (uvc_frame_desc attribute)

O

open_devices (uvc_context attribute) Oscilloscope (class in poulet_py) (class in poulet_py.utils) (class in poulet_py.utils.oscilloscope)

own_usb_ctx (uvc_context attribute)

P

parent (uvc_format_desc attribute) (uvc_frame_desc attribute) perform_manual_ffc() (in module poulet_py.hardware.camera.uvctypes) pin (GPIOTrigger attribute), [1], [2], [3] poulet_py module poulet_py.config module poulet_py.config.logging module poulet_py.config.settings module poulet_py.converters module poulet_py.converters.seq module poulet_py.hardware module poulet_py.hardware.camera module poulet_py.hardware.camera.basler module poulet_py.hardware.camera.uvctypes module poulet_py.hardware.stimulator module poulet_py.hardware.stimulator.arduino module poulet_py.hardware.stimulator.julabo module

poulet_py.hardware.stimulator.qst module poulet_py.hardware.triggers module poulet_py.hardware.triggers.base module poulet_py.hardware.triggers.gpio module poulet_py.hardware.triggers.keyboard module poulet_py.tools module poulet_py.tools.generators module poulet_py.tools.organizational module poulet_py.tools.serializers module poulet_py.utils module poulet_py.utils.oscilloscope module poulet_py.utils.qst module prev (uvc_device_handle attribute) (uvc_format_desc attribute) (uvc_frame_desc attribute) print_device_formats() (in module poulet_py.hardware.camera.uvctypes) print_device_info() (in module poulet_py.hardware.camera.uvctypes) print_shutter_info() (in module poulet_py.hardware.camera.uvctypes) pull_up (GPIOTrigger attribute), [1], [2], [3]

R

read() (JulaboChiller method), [1], [2], [3] READ_BATTERY (TCSCommand attribute), [1], [2], [3] READ_BUTTON_STATUS (TCSCommand attribute), [1], [2], [3] read_data() (Arduino method), [1], [2], [3] READ_ERRORS (TCSCommand attribute), [1], [2], [3] READ_INFO (TCSCommand attribute), [1], [2], [3] READ_STIMULATION_VALUES (TCSCommand attribute), [1], [2], [3] READ_TEMPERATURES (TCSCommand attribute), [1], [2], [3]

recording() (BaslerCamera method), [1], [2], [3] ref (uvc_device attribute) reserved (lep_oem_sw_version attribute) RESET (TCSCommand attribute), [1], [2], [3] reset() (TCS method), [1], [2], [3], [4], [5], [6], [7] RETURN_SPEED (TCSCommand attribute), [1], [2], [3] return_speed (TCSStimulus attribute), [1], [2], [3], [4], [5], [6], [7] rise_rate (TCSStimulus attribute), [1], [2], [3], [4], [5], [6], [7] run() (TCSInterface method), [1], [2], [3], [4], [5]

S

sanitize_path() (in module poulet_py) (in module poulet_py.tools) (in module poulet_py.tools.organizational) save_data() (Arduino method), [1], [2], [3] save_metadata() (BaslerCamera method), [1], [2], [3] save_metadata_exp() (in module poulet_py) (in module poulet_py.tools) (in module poulet_py.tools.serializers) save_temperature() (JulaboChiller method), [1], [2], [3] save_timestamp() (BaslerCamera method), [1], [2], [3] Seq (class in poulet_py) (class in poulet_py.converters) (class in poulet_py.converters.seq) sequence (uvc_frame attribute) set_auto_ffc() (in module poulet_py.hardware.camera.uvctypes) set_error_log_path() (Arduino method), [1], [2], [3] (BaslerCamera method), [1], [2], [3] (JulaboChiller method), [1], [2], [3] set_extension_unit() (in module poulet_py.hardware.camera.uvctypes) set_external_ffc() (in module poulet_py.hardware.camera.uvctypes) set_frames_per_second() (BaslerCamera method), [1], [2], [3] set_gain_auto() (in module poulet_py.hardware.camera.uvctypes) set_gain_high() (in module poulet_py.hardware.camera.uvctypes) set_gain_low() (in module poulet_py.hardware.camera.uvctypes) set_manual_ffc() (in module poulet_py.hardware.camera.uvctypes) SET_MAX_TEMPERATURE (TCSCommand attribute), [1], [2], [3] set_output_file() (Arduino method), [1], [2], [3] (BaslerCamera method), [1], [2], [3] (JulaboChiller method), [1], [2], [3] set_temperature() (JulaboChiller method), [1], [2], [3] set_timer() (Arduino method), [1], [2], [3] (BaslerCamera method), [1], [2], [3] (JulaboChiller method), [1], [2], [3]

Settings (class in poulet_py) (class in poulet_py.config) (class in poulet_py.config.settings) SETTINGS (in module poulet_py.config.settings) setup_logging() (in module poulet_py) (in module poulet_py.config) (in module poulet_py.config.logging) shutterMode (lep_sys_shutter_mode attribute) source (uvc_frame attribute) start() (JulaboChiller method), [1], [2], [3] (Oscilloscope method), [1], [2] start_streaming() (BaslerCamera method), [1], [2], [3] status_buf (uvc_device_handle attribute) status_cb (uvc_device_handle attribute) status_user_ptr (uvc_device_handle attribute) status_xfer (uvc_device_handle attribute) step (uvc_frame attribute) STIMULATION_DURATION (TCSCommand attribute), [1], [2], [3] STIMULATION_RATE (TCSCommand attribute), [1], [2], [3] stimuli (TCSInterface attribute), [1], [2] (TCSInterface property), [1], [2] stimulus (TCS property), [1], [2], [3] stop() (JulaboChiller method), [1], [2], [3] (Oscilloscope method), [1], [2] stop_streaming() (BaslerCamera method), [1], [2], [3] stream_video() (BaslerCamera method), [1], [2], [3] streams (uvc_device_handle attribute) surface (TCSStimulus attribute), [1], [2], [3], [4], [5], [6], [7] SURFACE_SELECTION (TCSCommand attribute), [1], [2], [3]

T

target (TCSStimulus attribute), [1], [2], [3], [4], [5], [6], [7] TARGET_TEMPERATURE (TCSCommand attribute), [1], [2], [3] TCS (class in poulet_py) (class in poulet_py.hardware) (class in poulet_py.hardware.stimulator) (class in poulet_py.hardware.stimulator.qst) TCSCommand (class in poulet_py) (class in poulet_py.hardware) (class in poulet_py.hardware.stimulator) (class in poulet_py.hardware.stimulator.qst) TCSInterface (class in poulet_py) (class in poulet_py.utils) (class in poulet_py.utils.qst) TCSStimulus (class in poulet_py) (class in poulet_py.hardware) (class in poulet_py.hardware.stimulator) (class in poulet_py.hardware.stimulator.qst)

tempLockoutState (lep_sys_shutter_mode attribute) timeout (BaseTrigger attribute), [1], [2], [3] (GPIOTrigger attribute), [1], [2] (KeyboardTrigger attribute), [1], [2] timeval (class in poulet_py.hardware.camera.uvctypes) to_df() (TCSInterface method), [1], [2], [3], [4], [5] to_hdf() (Seq method), [1], [2] to_list() (Seq method), [1], [2] to_numpy() (Seq method), [1], [2] to_pickle() (Seq method), [1], [2] trigger() (TCS method), [1], [2], [3], [4], [5], [6], [7] TRIGGER_CHANNEL_DURATION (TCSCommand attribute), [1], [2], [3] TRIGGER_STIMULATION (TCSCommand attribute), [1], [2], [3] tv_sec (timeval attribute) tv_usec (timeval attribute)

U

usb_ctx (uvc_context attribute) usb_dev (uvc_device attribute) usb_devh (uvc_device_handle attribute) uvc_context (class in poulet_py.hardware.camera.uvctypes) uvc_device (class in poulet_py.hardware.camera.uvctypes) uvc_device_handle (class in poulet_py.hardware.camera.uvctypes)

uvc_format_desc (class in poulet_py.hardware.camera.uvctypes) uvc_frame (class in poulet_py.hardware.camera.uvctypes) uvc_frame_desc (class in poulet_py.hardware.camera.uvctypes) uvc_get_frame_formats_by_guid() (in module poulet_py.hardware.camera.uvctypes) uvc_iter_formats() (in module poulet_py.hardware.camera.uvctypes) uvc_iter_frames_for_format() (in module poulet_py.hardware.camera.uvctypes) uvc_stream_ctrl (class in poulet_py.hardware.camera.uvctypes)

V

videoFreezeDuringFFC (lep_sys_shutter_mode attribute)

W

wait() (BaseTrigger method), [1], [2], [3] (GPIOTrigger method), [1], [2], [3] (KeyboardTrigger method), [1], [2], [3] wCompQuality (uvc_stream_ctrl attribute) wCompWindowSize (uvc_stream_ctrl attribute) wDelay (uvc_stream_ctrl attribute)

wHeight (uvc_frame_desc attribute) width (uvc_frame attribute) wKeyFrameRate (uvc_stream_ctrl attribute) wPFrameRate (uvc_stream_ctrl attribute) write() (JulaboChiller method), [1], [2], [3] (TCS method), [1], [2], [3] wWidth (uvc_frame_desc attribute)